rs4675398 chr2:204012347 A>C
- Sequence
atagagttttcctagaattgattc[A/C]attaacaacttactggggttttaa
- ASB in cell types
- induced pluripotent stem cells LNCaP (prostate carcinoma)
- ASB for transcription factors
- DUX4_HUMAN ANDR_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| DUX4_HUMAN | 2.53 | n/a | 1.00 | -0.77 | Weak Concordant | |||
| ANDR_HUMAN | -0.84 | 1.24 | 1.60 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.18 | 0.77 | 1.95 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, ldl cholesterol, parkinsons disease, urinary albumin-to-creatinine ratio