rs468279 chr3:13461707 G>C
- Sequence
agagctgttcgggcctcccgccag[G/C]gggagtcaccttggcagaggagga
- ASB in cell types
- HEK293 (embryonic kidney) H1 (embryonic stem cells) MM1.S (plasma cell myeloma) HUES64 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN SRF_HUMAN CTCFL_HUMAN USF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.73 | 0.23 | 1.45 | -5.14 | Concordant | |||
| SRF_HUMAN | 1.89 | -2.51 | 1.50 | n/a | No Hit | |||
| CTCFL_HUMAN | 2.04 | n/a | 2.00 | -6.69 | Concordant | |||
| USF1_HUMAN | 1.57 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellum, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg