rs469108 chr21:42010445 G>A
- Sequence
tgggcgccgggcgccggagggcgg[G/A]gcggggggggggcctcgcggcgca
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) H1 (embryonic stem cells)
- ASB for transcription factors
- CREB1_HUMAN E2F1_HUMAN ATF3_HUMAN ATF7_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.55 | 1.64 | 1.97 | n/a | No Hit | |||
| E2F1_HUMAN | n/a | 0.64 | 1.33 | -3.40 | Discordant | |||
| ATF3_HUMAN | -0.37 | 1.28 | 1.39 | n/a | No Hit | |||
| ATF7_HUMAN | -1.35 | 1.16 | 1.33 | n/a | n/a | |||
| MNT_HUMAN | -1.30 | 1.51 | 1.33 | n/a | n/a |
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Motif analysis
