rs4692538 chr4:26500838 G>T
- Sequence
tgtatttttagtagagatggggtt[G/T]cgtcatattagccaggctggtttc
- ASB in cell types
- K562 (myelogenous leukemia) mesenchymal stem cells SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- CEBPB_HUMAN ATF4_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.85 | -0.43 | 1.44 | -2.27 | Concordant | |||
| ATF4_HUMAN | 2.69 | n/a | 2.00 | -1.77 | Weak Concordant | |||
| ATF3_HUMAN | 1.89 | -3.29 | 2.25 | -2.73 | Concordant |
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Motif analysis
