rs469286 chr3:13461784 C>T
- Sequence
ttctgcagcgccctcttgtggcag[C/T]agcaaggctgtagactttgagggt
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) HeLa Kyoto (cervical adenocarcinoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN SRF_HUMAN ZN335_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.13 | 0.43 | 1.52 | n/a | No Hit | |||
| SMC3_HUMAN | 1.40 | -0.14 | 1.83 | n/a | n/a | |||
| SRF_HUMAN | 1.57 | 0.07 | 1.50 | n/a | No Hit | |||
| ZN335_HUMAN | -3.03 | 2.31 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellum, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg