rs4705204 chr5:147835557 T>G
- Sequence
tctttactgctctgagtacatatt[T/G]atgcatgtctatctttgggaactc
- ASB in cell types
- A549 (lung carcinoma) VCaP (prostate carcinoma) BT-474 (breast invasive ductal carcinoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN CEBPB_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -1.32 | 2.10 | 2.17 | n/a | No Hit | |||
| JUN_HUMAN | -0.80 | 1.61 | 2.00 | n/a | No Hit | |||
| CEBPB_HUMAN | -0.43 | 1.43 | 2.07 | n/a | No Hit | |||
| EP300_HUMAN | -1.11 | 1.58 | 2.20 | n/a | n/a | |||
| JUNB_HUMAN | -0.88 | 1.66 | 2.25 | n/a | No Hit |
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