ADASTRA v1.6.10
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rs470933
chr18:76983625
C
>
T
Sequence
tctgacataaagctgcttacttag[C/T]agctcagttactccctgctcactt
ASB in cell types
erythroid cells
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.67
0.54
0.01
0.51
1.31
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
cystatin c in serum
,
ldl cholesterol change with statins
,
total cholesterol change with statins
GTEx eQTL
Brain_Hippocampus
,
Brain_Putamen_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Esophagus_Mucosa
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Stomach
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)