rs471568 chr6:52333987 A>C
- Sequence
aaaacactgtgagaaaggtcacac[A/C]ttaaaccacaaatgttttgggttc
- ASB in cell types
- K562 (myelogenous leukemia) Th1-cells
- ASB for transcription factors
- TBX21_HUMAN COT1_HUMAN ARI1B_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -2.71 | 2.58 | 1.33 | 3.33 | Concordant | |||
| COT1_HUMAN | -3.41 | 2.42 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | n/a | 2.49 | 2.00 | n/a | n/a | |||
| HDAC2_HUMAN | -2.02 | 2.08 | 2.00 | n/a | n/a |
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Motif analysis
