rs472539 chr11:62841530 C>G
- Sequence
acactagcgataaaaacacctaat[C/G]caactcaaacaacaagaacataac
- ASB in cell types
- HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) HT29 (colon adenocarcinoma) germinal center B-cells
- ASB for transcription factors
- CREB1_HUMAN GATA4_HUMAN SIN3A_HUMAN SP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.46 | -0.60 | 1.38 | n/a | No Hit | |||
| GATA4_HUMAN | 2.25 | -2.72 | 1.50 | n/a | No Hit | |||
| SIN3A_HUMAN | 1.58 | -1.85 | 1.33 | n/a | n/a | |||
| SP1_HUMAN | 1.22 | 0.01 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), obesity with early age of onset (age >2), serum creatinine, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood