rs4727044 chr7:149310440 C>T
- Sequence
caggctgaaatctgaaaaaaaata[C/T]ctagtttggcccagcaatgtctga
- ASB in cell types
- A549 (lung carcinoma) gastroesophageal sphincter MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- RAD21_HUMAN ZNF24_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.72 | 0.10 | 1.80 | n/a | n/a | |||
| ZNF24_HUMAN | 1.72 | 0.69 | 1.62 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP amyotrophic lateral sclerosis (als), aortic valve calcium, obesity with early age of onset (age >2), serum creatinine, sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood