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rs473909 chr13:30125307 A>T

Sequence
aacaagaagtgctaacatgtattg[A/T]gtgcttagtctgagccaggcactg
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -1.20 1.82 1.004.7·10-8 1.50 4.49 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GTEx eQTL Skin_Sun_Exposed_Lower_leg

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