rs477706 chr9:33229482 A>C
- Sequence
cccaccacagggagagggcagcag[A/C]gatcttcgggcagcttgagggtca
- ASB in cell types
- Peyer's patch VCaP (prostate carcinoma) pancreas HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.05 | 0.27 | 1.41 | n/a | No Hit | |||
| SMC3_HUMAN | 1.19 | 0.33 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Hippocampus, Colon_Transverse, Esophagus_Muscularis, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood