rs4782488 chr16:88975210 C>T
- Sequence
agccatgtcagaggtccaccctga[C/T]cctctgctcctcacctgcagccat
- ASB in cell types
- GM12878 (female B-cells) LY-2 (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN IKZF2_HUMAN BACH1_HUMAN MTA2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.36 | 1.33 | 2.54 | -3.10 | Discordant | |||
| IKZF2_HUMAN | 2.22 | -2.95 | 1.50 | n/a | n/a | |||
| BACH1_HUMAN | 2.00 | n/a | 1.33 | n/a | No Hit | |||
| MTA2_HUMAN | 2.01 | n/a | 1.50 | n/a | n/a | |||
| IKZF1_HUMAN | 1.67 | -1.56 | 1.33 | n/a | No Hit |
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Motif analysis
