rs479018 chr11:66293075 G>A
- Sequence
ggagtctgtgccctggggacaggc[G/A]agggtctggagtttcctgggtgac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- CLOCK_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | -1.55 | 2.02 | 1.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, fasting insulin, hdl cholesterol, homa-ir, infant head circumference, iris crypt frequency, ldl cholesterol, number of iris nevi, triglycerides, years of education
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood