rs479116 chr13:77528927 G>C
- Sequence
acagctaactgagatggtgtaggt[G/C]tctgtccttttatggctagccaga
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- IKZF1_HUMAN SRF_HUMAN COT1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.28 | -0.76 | 1.33 | n/a | No Hit | |||
| SRF_HUMAN | 0.65 | n/a | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | 1.45 | -1.71 | 1.33 | n/a | No Hit | |||
| TBX21_HUMAN | 1.70 | n/a | 1.33 | -6.22 | Concordant | |||
| IKZF2_HUMAN | 1.34 | -0.69 | 1.33 | n/a | n/a |
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Motif analysis
