rs479248 chr6:73580594 C>T
- Sequence
ttgctccactagtcatcttctttc[C/T]ttaaaccaaaaagaaagaaaaaaa
- ASB in cell types
- A549 (lung carcinoma) HUVEC (umbilical vein endothelial cells) BEAS-2B (bronchial epithelium) foreskin keratinocyte
- ASB for transcription factors
- JUN_HUMAN GCR_HUMAN EP300_HUMAN FOS_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.09 | -0.07 | 1.14 | n/a | No Hit | |||
| GCR_HUMAN | 1.14 | -0.69 | 1.35 | n/a | No Hit | |||
| EP300_HUMAN | 1.21 | -0.27 | 1.30 | n/a | n/a | |||
| FOS_HUMAN | 1.85 | -1.84 | 1.33 | n/a | n/a | |||
| JUNB_HUMAN | 1.47 | -0.26 | 1.22 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood