rs4796702 chr17:41786667 T>C
- Sequence
gcggacagcgaactgagctcggcg[T/C]ggtcgggcggcggctgctccggac
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) tibial nerve foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.28 | 0.99 | 1.61 | 2.12 | Concordant | |||
| NRF1_HUMAN | -2.70 | 2.09 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | -1.16 | 1.74 | 2.00 | n/a | n/a |
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Motif analysis
