rs4799838 chr18:36017567 T>C
- Sequence
aactacttttcaatctcatctcac[T/C]tctaagaactgatacagtaacaac
- ASB in cell types
- foreskin keratinocyte H929 (plasma cell myeloma)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| foreskin keratinocyte | 1.30 | -1.06 | 2.25 | |||
| H929 (plasma cell myeloma) | 2.02 | -1.71 | 2.00 |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, ldl cholesterol, total cholesterol, variant creutzfeldt-jakob disease, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid