rs4802983 chr19:52692482 A>G
- Sequence
tcacccaggctggagtgtactggc[A/G]ctatctcggctcactgcaacctcc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- IKZF1_HUMAN KDM1A_HUMAN MTG16_HUMAN ZEB2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -2.02 | 2.08 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | n/a | 1.90 | 2.00 | n/a | n/a | |||
| MTG16_HUMAN | n/a | 0.39 | 2.00 | n/a | n/a | |||
| ZEB2_HUMAN | -1.26 | 1.70 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid