rs4821892 chr22:39399678 G>C
- Sequence
gctacgacccccatccctcttcgg[G/C]cgtggggtggcgctgggcgcatgc
- ASB in cell types
- neural cell GM12878 (female B-cells) foreskin keratinocyte bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN BC11B_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.44 | 2.35 | 1.71 | 2.94 | Concordant | |||
| RAD21_HUMAN | -1.20 | 2.16 | 1.44 | n/a | n/a | |||
| BC11B_HUMAN | -1.96 | 2.84 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | -2.02 | 1.83 | 1.33 | n/a | n/a | |||
| TRI22_HUMAN | -1.50 | 1.95 | 1.17 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood