rs482356 chr11:59802795 C>T
- Sequence
tcaggttttagaatgcagttcaca[C/T]ctttttaagccatgtgctggatca
- ASB in cell types
- A549 (lung carcinoma) spleen HeLa S3 (cervical adenocarcinoma) gastroesophageal sphincter
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.42 | 1.46 | 1.92 | n/a | n/a | |||
| SMC3_HUMAN | -0.31 | 1.33 | 1.92 | n/a | n/a | |||
| CTCF_HUMAN | 0.68 | 0.92 | 1.45 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Whole_Blood