rs4841656 chr8:11959103 C>A
- Sequence
gtcacagtccacaagggaggcttc[C/A]agtggatcccacaaaagaagtggg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) HEK293 (embryonic kidney) lymphoblastoid cells
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.46 | 0.40 | 1.49 | n/a | No Hit | |||
| RAD21_HUMAN | 1.35 | -0.32 | 1.82 | n/a | n/a | |||
| SMC3_HUMAN | 1.29 | -0.29 | 1.76 | n/a | n/a | |||
| IKZF1_HUMAN | 2.11 | -1.97 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Ovary, Pituitary, Small_Intestine_Terminal_Ileum