rs4844378 chr1:207316690 A>G
- Sequence
tgagttagaatgtaaatatgaaat[A/G]gactggttcctcagatgtgaggca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) ZR-75-1 (invasive ductal carcinoma) K562 (myelogenous leukemia) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GRHL2_HUMAN CLOCK_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.45 | 1.40 | 1.90 | n/a | No Hit | |||
| ESR1_HUMAN | -0.07 | 1.22 | 2.30 | n/a | No Hit | |||
| GRHL2_HUMAN | -0.22 | 1.14 | 1.71 | -0.79 | Weak Discordant | |||
| CLOCK_HUMAN | -1.09 | 2.04 | 2.00 | n/a | No Hit | |||
| ZXDC_HUMAN | n/a | 1.57 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Uterus, Vagina, Whole_Blood