rs489591 chr11:94603265 T>C
- Sequence
gcagtcatggggttgatggtcctg[T/C]cacctgctgggcgagttttaaaaa
- ASB in cell types
- Peyer's patch right lobe of liver K562 (myelogenous leukemia) H929 (plasma cell myeloma)
- ASB for transcription factors
- CTCF_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -3.34 | 3.21 | 1.89 | 4.01 | Concordant | |||
| REST_HUMAN | n/a | 2.02 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood