rs489676 chr1:44986555 G>C
- Sequence
agtcacagctataactcagctccc[G/C]gcacgccgcaaccgctcccagcga
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney) NB4 (acute promyelocytic leukemia )
- ASB for transcription factors
- GLIS1_HUMAN TF65_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | -1.79 | 2.22 | 2.00 | n/a | n/a | |||
| TF65_HUMAN | 1.81 | -0.08 | 2.25 | n/a | No Hit | |||
| KDM5B_HUMAN | 1.26 | -0.05 | 1.89 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alanine aminotransferase (alt) elevation due to lapatinib treatment of metastatic breast cancer
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid