rs4902540 chr14:67964578 T>C
- Sequence
caaatggtgctttctttttctgta[T/C]ctcctcctaaggttttttaacagc
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) ZR-75-1 (invasive ductal carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN GCR_HUMAN EP300_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.09 | 0.81 | 1.55 | n/a | No Hit | |||
| GCR_HUMAN | 0.16 | 1.40 | 1.70 | n/a | No Hit | |||
| EP300_HUMAN | -1.45 | 1.47 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.41 | 1.19 | 1.92 | n/a | n/a | |||
| JUN_HUMAN | -0.31 | 0.86 | 1.92 | n/a | No Hit |
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