rs4908923 chr1:6554475 G>A
- Sequence
gccaagtggaacggcaggaacccc[G/A]ctttagcagcagtcccgagtccgc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HeLa S3 (cervical adenocarcinoma) WI-38 (lung fibroblasts)
- ASB for transcription factors
- SP1_HUMAN NRF1_HUMAN MNT_HUMAN CTBP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | -0.70 | 0.70 | 1.00 | n/a | No Hit | |||
| NRF1_HUMAN | -0.57 | 1.50 | 1.00 | n/a | No Hit | |||
| MNT_HUMAN | 0.25 | 1.43 | 1.50 | n/a | n/a | |||
| CTBP1_HUMAN | -1.85 | 1.66 | 1.33 | n/a | n/a | |||
| NCOR1_HUMAN | -1.77 | 1.58 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, homa-b, homa-ir, infant head circumference, ldl cholesterol, ldl cholesterol change with statins, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood