rs4925084 chr17:20095645 C>T
- Sequence
agggacgctagcactggccgccat[C/T]ccccgggggcagttagtgagaccc
- ASB in cell types
- cranial neural crest cells
- ASB for transcription factors
- AP2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 1.65 | -1.52 | 2.00 | 1.46 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP hdl cholesterol change with statins, ldl cholesterol change with statins, mean corpuscular hemoglobin concentration (mchc), mean corpuscular volume (mcv)
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood