rs4927176 chr1:54888662 C>T
- Sequence
atagcctggacctgtactgtctta[C/T]acaacagctatgagctactggtat
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) liver
- ASB for transcription factors
- CEBPA_HUMAN FOXA1_HUMAN HNF4A_HUMAN HLF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | 3.10 | n/a | 1.50 | -4.92 | Concordant | |||
| FOXA1_HUMAN | 2.10 | 0.76 | 1.79 | n/a | No Hit | |||
| HNF4A_HUMAN | 2.78 | -0.22 | 1.33 | n/a | No Hit | |||
| HLF_HUMAN | -2.37 | 2.16 | 1.50 | -3.20 | Discordant | |||
| CEBPG_HUMAN | 2.10 | -2.34 | 1.33 | n/a | No Hit |
Items per page:
1 – 5 of 8
Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood