rs4934958 chr10:38528688 G>C
- Sequence
aaatgtaatagaagagaatggact[G/C]taatggaatggagagaaatggaat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN MNT_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.80 | 1.87 | 2.17 | n/a | No Hit | |||
| EP300_HUMAN | -0.27 | 1.89 | 2.20 | n/a | n/a | |||
| MNT_HUMAN | -1.29 | 2.10 | 2.17 | n/a | n/a | |||
| GCR_HUMAN | 0.44 | 2.22 | 2.00 | n/a | No Hit | |||
| RING2_HUMAN | n/a | 3.19 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 83
Motif analysis
