rs494791 chr11:83285943 A>C
- Sequence
acgatctcctctgccttgggagag[A/C]aagagccgccaagcctggcgacta
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- MTA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTA2_HUMAN | 1.67 | 0.31 | 1.78 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, partial epilepsy, sporadic creutzfeldt-jakob disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid