rs4951583 chr1:212242736 C>T
- Sequence
aaagcctgcaaaacaaaaggacaa[C/T]ttacaggctggcatgctcactgag
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN SOX13_HUMAN RARA_HUMAN SOX5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -0.84 | 2.54 | 1.33 | n/a | No Hit | |||
| SOX13_HUMAN | -2.74 | 2.50 | 1.50 | n/a | n/a | |||
| RARA_HUMAN | -2.63 | 2.40 | 1.33 | n/a | No Hit | |||
| SOX5_HUMAN | -3.20 | 2.61 | 1.50 | n/a | No Hit | |||
| TFE3_HUMAN | -2.53 | 2.44 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP acute lung injury following major trauma, adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, height, transmission distortion, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood