rs4952364 chr2:41414418 A>C
- Sequence
ccattccttataaaagaaggttat[A/C]acttcttcacacgaaatacaacag
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.73 | 1.13 | 1.60 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease with psychotic symptoms (alzheimers disease with psychotic symptoms v. alzheimers disease without psychotic symptoms), body mass index (bmi), ldl cholesterol, total cholesterol, triglycerides, years of education