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rs497993 chr17:29568510 T>C

Sequence
actgagccttgcgcgctgacccgg[T/C]tcctacacttaacttttccggctt
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
ASB for transcription factors
MNT_HUMAN NRF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MNT_HUMAN 1.76 -0.56 0.021.00 2.00 n/a n/a
NRF1_HUMAN 1.13 -0.07 0.041.00 2.00 1.18 Weak Discordant
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Motif analysis

NRF1_HUMAN Weak Discordant
NRF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Cerebellum Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood

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