rs498586 chr19:38993441 C>T
- Sequence
gtaagggcttctccttttgagtca[C/T]ggatcagagctgagtcacatgcac
- ASB in cell types
- K562 (myelogenous leukemia) coronary artery smooth muscle
- ASB for transcription factors
- JUND_HUMAN IKZF1_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUND_HUMAN | -1.70 | 1.51 | 1.33 | 0.13 | Weak Concordant | |||
| IKZF1_HUMAN | n/a | 2.49 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | -1.99 | 2.22 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood