rs4993564 chr1:11909934 C>T
- Sequence
gaagagaaactagagtaagaactt[C/T]gatgagtggcactcagttctcagg
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- SMAD5_HUMAN T2EB_HUMAN RING2_HUMAN CBX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD5_HUMAN | 2.97 | n/a | 1.50 | n/a | n/a | |||
| T2EB_HUMAN | 2.59 | n/a | 2.00 | n/a | n/a | |||
| RING2_HUMAN | 2.29 | -0.03 | 1.42 | n/a | n/a | |||
| CBX1_HUMAN | 2.08 | -2.00 | 1.50 | n/a | n/a | |||
| SIN3A_HUMAN | 2.01 | -1.67 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Pancreas, Spleen, Stomach, Testis, Thyroid, Whole_Blood