rs4993566 chr1:11909937 T>G
- Sequence
gagaaactagagtaagaacttcga[T/G]gagtggcactcagttctcaggtaa
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- SMAD5_HUMAN RING2_HUMAN T2EB_HUMAN CBX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD5_HUMAN | 2.97 | n/a | 1.50 | n/a | n/a | |||
| RING2_HUMAN | 2.25 | -0.18 | 1.42 | n/a | n/a | |||
| T2EB_HUMAN | 2.48 | n/a | 2.00 | n/a | n/a | |||
| CBX1_HUMAN | 2.06 | n/a | 1.50 | n/a | n/a | |||
| SIN3A_HUMAN | 2.07 | -1.76 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Testis, Thyroid, Whole_Blood