rs500659 chr11:60841939 T>C
- Sequence
gactgcgctcgcgcgaattgcgca[T/C]gcgcatgctgagccccactctccc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) CD14+ monocytes
- ASB for transcription factors
- NRF1_HUMAN ZN639_HUMAN ZBTB2_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.42 | 0.38 | 2.35 | -4.05 | Concordant | |||
| ZN639_HUMAN | 1.79 | n/a | 2.00 | n/a | n/a | |||
| ZBTB2_HUMAN | 3.37 | n/a | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | 1.56 | 0.44 | 1.52 | n/a | No Hit | |||
| EGR1_HUMAN | 2.04 | -0.70 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis