ADASTRA v1.6.10
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rs5024655
chr14:31251205
A
>
T
Sequence
ccctcagcctcctgagtagctggg[A/T]ctacaggtacatgccaccatgcct
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
NR2F6_HUMAN
COT1_HUMAN
SOX13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NR2F6_HUMAN
2.22
-1.67
1.0·10
-3
1.00
2.00
n/a
n/a
COT1_HUMAN
2.18
-1.64
0.02
1.00
2.00
n/a
No Hit
SOX13_HUMAN
2.14
-1.62
0.03
1.00
2.00
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Thyroid
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)