rs502729 chr5:179821774 A>C
- Sequence
ttcttcagaagtgttggtgttggc[A/C]cagaagccctgtttcctgctgcgc
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.62 | 0.11 | 1.87 | -0.75 | Weak Concordant | |||
| EP300_HUMAN | 1.64 | 0.32 | 1.39 | n/a | n/a |
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Motif analysis
