rs503288 chr11:125591892 A>G
- Sequence
ggaagtgcctgaggataaaggtgt[A/G]cacgtgcgagtctgagatgatgga
- ASB in cell types
- T47D (invasive ductal carcinoma) CD14+ monocytes GM12878 (female B-cells)
- ASB for transcription factors
- HIF1A_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIF1A_HUMAN | n/a | 3.38 | 2.00 | 2.05 | Concordant | |||
| STAT1_HUMAN | n/a | 2.05 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid