rs503913 chr2:233854580 C>T
- Sequence
aactcaaataggagactccgccct[C/T]cctgccttcctctcggttttctat
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) HEK293T (embryonic kidney) HEK293 (embryonic kidney)
- ASB for transcription factors
- GABPA_HUMAN FOXK2_HUMAN GABP1_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | -0.47 | 1.61 | 1.81 | 4.74 | Concordant | |||
| FOXK2_HUMAN | -0.24 | 2.40 | 1.83 | n/a | n/a | |||
| GABP1_HUMAN | n/a | 2.66 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | -0.10 | 1.12 | 1.83 | n/a | No Hit |
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Motif analysis
