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rs504850 chr19:55654109 C>T

Sequence
cagaagcctgtttcccctcacccg[C/T]ggcttccaccctgcgcaggcgcaa
ASB in cell types
HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
ASB for transcription factors
NRF1_HUMAN SP7_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN -1.87 1.67 1.005.6·10-6 1.33 n/a No Hit
SP7_HUMAN -2.51 2.08 1.000.02 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP infant head circumference years of education
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Hippocampus Cells_Cultured_fibroblasts Colon_Sigmoid Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Lung Muscle_Skeletal Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Testis Thyroid

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