rs505248 chr19:34220638 T>G
- Sequence
caaattgtcattgtccttgtcctt[T/G]tcctggctgaagtttggtgccctc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) neural progenitors MM1.S (plasma cell myeloma)
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.38 | 0.16 | 1.49 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.22 | -0.77 | 1.58 | n/a | n/a | |||
| RAD21_HUMAN | 1.05 | -0.21 | 1.46 | n/a | n/a |
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