rs507872 chr19:3185555 G>A
- Sequence
ctcccagaagacctagcgcgccag[G/A]caggcacttccttttctctttatc
- ASB in cell types
- GM12878 (female B-cells) HL-60 (acute myeloid leukemia) liver VCaP (prostate carcinoma)
- ASB for transcription factors
- GABPA_HUMAN ELF1_HUMAN SPI1_HUMAN ZBT40_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.93 | -0.36 | 1.75 | n/a | No Hit | |||
| ELF1_HUMAN | 1.12 | -0.66 | 1.50 | n/a | No Hit | |||
| SPI1_HUMAN | 1.96 | 0.02 | 1.89 | n/a | No Hit | |||
| ZBT40_HUMAN | 0.54 | -1.50 | 1.33 | n/a | n/a | |||
| HCFC1_HUMAN | 2.50 | -0.91 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood