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rs507872 chr19:3185555 G>A

Sequence
ctcccagaagacctagcgcgccag[G/A]caggcacttccttttctctttatc
ASB in cell types
GM12878 (female B-cells) HL-60 (acute myeloid leukemia) liver VCaP (prostate carcinoma)
ASB for transcription factors
GABPA_HUMAN ELF1_HUMAN SPI1_HUMAN ZBT40_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN 1.93 -0.36 2.0·10-91.00 1.75 n/a No Hit
ELF1_HUMAN 1.12 -0.66 1.1·10-61.00 1.50 n/a No Hit
SPI1_HUMAN 1.96 0.02 6.6·10-61.00 1.89 n/a No Hit
ZBT40_HUMAN 0.54 -1.50 1.2·10-41.00 1.33 n/a n/a
HCFC1_HUMAN 2.50 -0.91 5.6·10-41.00 1.17 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Brain_Spinal_cord_cervical_c-1 Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Whole_Blood

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