rs507905 chr19:3185565 C>T
- Sequence
acctagcgcgccaggcaggcactt[C/T]cttttctctttatccccaacttcc
- ASB in cell types
- GM12878 (female B-cells) HUES64 (embryonic stem cells) liver HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- GABPA_HUMAN SPI1_HUMAN ELF1_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.58 | -0.30 | 1.75 | -5.33 | Concordant | |||
| SPI1_HUMAN | 1.92 | -0.02 | 1.81 | -5.48 | Concordant | |||
| ELF1_HUMAN | 1.02 | -0.47 | 1.50 | -5.60 | Concordant | |||
| HCFC1_HUMAN | 2.61 | -0.80 | 1.17 | n/a | n/a | |||
| THA11_HUMAN | 1.32 | -0.70 | 1.33 | n/a | No Hit |
Items per page:
1 – 5 of 10
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood