rs508153 chr6:13407690 C>T
- Sequence
ggggttttgtgcaaatgtcatctt[C/T]tgcccagttctgagtttctatgta
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA2_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.81 | -0.08 | 1.52 | n/a | No Hit | |||
| FOXA2_HUMAN | 2.06 | -1.74 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.00 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Muscle_Skeletal