rs509539 chr6:33740413 A>C
- Sequence
ctaatttctgctgatggggcgcag[A/C]caccgagctggttgttaaatgagg
- ASB in cell types
- K562 (myelogenous leukemia) T47D (invasive ductal carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- PRGR_HUMAN ANDR_HUMAN EMSY_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | 2.26 | -1.29 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 0.15 | 1.13 | 1.79 | n/a | No Hit | |||
| EMSY_HUMAN | n/a | 1.96 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood