rs510122 chr11:59754154 T>C
- Sequence
caccagggggcgcggaagccctcc[T/C]ggtactaaggcggggacaacctgc
- ASB in cell types
- A549 (lung carcinoma) HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.20 | 1.57 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | -0.13 | 1.27 | 1.91 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Substantia_nigra, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Spleen, Testis, Whole_Blood