rs514991 chr1:28846509 C>T
- Sequence
ccagcctggccaacatagtgaaac[C/T]gcatctctactaaaaatacaaaaa
- ASB in cell types
- HEK293T (embryonic kidney) HEK293 (embryonic kidney) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 0.79 | 1.55 | n/a | No Hit | |||
| ZFX_HUMAN | 0.13 | 1.30 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood